学部・大学院区分農・博前
時間割コード2930010
科目区分Ｃ類
Category C
科目名　【日本語】データサイエンス特別講義４
科目名　【英語】
コースナンバリングコード
担当教員　【日本語】
担当教員　【英語】
単位数1
開講期・開講時間帯
対象学年１年
1
授業形態


授業の目的　【日本語】
授業の目的　【英語】
Based on Data Sciences 1, 2 and 3, this course introduces practical approaches of transcriptomics and outline of proteomics, metabolomics and multi-omics.
到達目標　【日本語】
Based on Data Sciences 1, 2 and 3, this course introduces practical approaches of transcriptomics and outline of proteomics, metabolomics and multi-omics.
授業の内容や構成
1. Preparing a computing environment for NGS analysis in Mac (Instructions for homebrew/Bioconda to install popular bioinformatics tools; Instructions for downloading NGS data from Sequence Read Archive)
2. Guidance for RNA-Seq data analysis pipelines (Read mapping, calculation of the expression values and statistical analysis)
3. Genome-wide analysis of binding sites of a DNA-binding transcription factor (Mapping, Peak detection and Identification of promoter regulated by the target transcription factor)
4. Integrated data mining with biological big data using R (Correlation analysis and Clustering)
5. 16S rDNA metagenome analysis using bioinformatics tools (LocalBLAST and QIIME2)
6. Outline of proteomics and metabolomics
7. Application of multi-omics

1. Preparing a computing environment for NGS analysis in Mac (Instructions for homebrew/Bioconda to install popular bioinformatics tools; Instructions for downloading NGS data from Sequence Read Archive)
2. Guidance for RNA-Seq data analysis pipelines (Read mapping, calculation of the expression values and statistical analysis)
3. Genome-wide analysis of binding sites of a DNA-binding transcription factor (Mapping, Peak detection and Identification of promoter regulated by the target transcription factor)
4. Integrated data mining with biological big data using R (Correlation analysis and Clustering)
5. 16S rDNA metagenome analysis using bioinformatics tools (LocalBLAST and QIIME2)
6. Outline of proteomics and metabolomics
7. Application of multi-omics
履修条件・関連する科目
成績評価の方法と基準
Evaluate each lesson by attendance and short report
教科書・テキスト
参考書
課外学習等（授業時間外学習の指示）
授業開講形態等
遠隔授業（オンデマンド型）で行う場合の追加措置